Update:
Car is just about stripped, found a lot of repair areas on the drivers side. Should be sanding this week and getting ready to primer and paint.
The good news...the Trans was replaced and working fine, engine runs really smooth after warming up. I do have a check engine light on and the Hyper chip really makes it run rich, so I will be doing my own to get it to run better.
It is finally off jack stands to move it around and get to areas that were hard to reach before.
Getting closer and seeing some progress...thanks VetteTech81 for so much help!!!